Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THCA rs45563538 chr18:13825298 T/A 1.27E-5 501 31.42 33.4 50 KM Plot
THCA rs45622735 chr18:13825383 T/C 1.27E-5 501 31.42 33.4 50 KM Plot
THCA rs4568007 chr20:47316575 C/G 3.7E-9 503 31.6 32.03 18.22 KM Plot
THCA rs4611697 chr20:47246478 T/C 0 502 31.47 32.93 7.77 KM Plot
THCA rs4616535 chr20:47248808 C/T 0 503 31.47 33.27 7.77 KM Plot
THCA rs4660500 chr1:41524669 G/A 1.2E-7 502 27.33 30.43 31.93 KM Plot
THCA rs4678208 chr3:122451821 T/C 6.54E-6 499 20.87 25.87 31.98 KM Plot
THCA rs4678209 chr3:122460194 T/A 6.22E-6 501 20.87 25.17 31.93 KM Plot
THCA rs4678217 chr3:122529408 A/G 2.25E-6 503 15.9 26.57 31.93 KM Plot
THCA rs4687754 chr3:53896679 T/G 4.26E-6 495 31.5 30.63 24.75 KM Plot
THCA rs4687759 chr3:53930105 G/A 2.87E-6 501 31.5 31.93 24.75 KM Plot
THCA rs4720463 chr7:43966626 T/C 2.48E-9 501 31.15 33.53 30.83 KM Plot
THCA rs4720464 chr7:44007700 G/A 3.91E-9 493 31.15 33.08 33.7 KM Plot
THCA rs4723197 chr7:32787400 A/T 0.0001 499 31.47 31.68 31.97 KM Plot
THCA rs4723199 chr7:32789486 A/G 9.58E-5 502 31.45 31.57 31.97 KM Plot